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AirNR Urine Collection Completion Manual of Operations section4.5. LaboratoryMost of the procedures and laboratory equipment and supplies used in MESA Air are similar to those used in previous MESA Exams. I. PURPOSEThe general goal of the MESA Air Pollution Study is to look at the effects of air pollution on atherosclerosis. A secondary goal is to look for interactions between genetic risk factors and environmental risk factors. This will be accomplished by utilizing all the current organizational structures of the Multi-Ethnic Study of Atherosclerosis (MESA). MESA itself is a study of the characteristics of sub-clinical cardiovascular disease (disease detected non-invasively before it has produced clinical signs and symptoms) and risk factors that predict progression to clinically overt cardiovascular disease, and that predict progression of sub-clinical disease itself, in a diverse, population-based sample of 6,814 men and women who were aged 45–84 at baseline. The Central Blood Analysis Laboratory (CBAL) will have responsibilities for special blood collection and handling protocols as well as training and QC monitoring at the Clinical Centers. The laboratory will also be responsible for performing assays and reporting results. The blood samples collected and processed by Clinical Center technicians are the foundation for all of these tests. The most important step (and potentially the most variable) is the collection and processing of the blood samples. If the blood sample itself is not correctly drawn and processed, the laboratory results may not be precise or may not be valid. MESA Air Pollution involves the collection of 54.5 mls of blood from 300 new participants at the MESA Air Pollution baseline exam. II. EQUIPMENT AND SUPPLIESCBAL will provide the following in bulk:
The Coordinating Center will supply Participant ID barcode labels for forms, collection containers, and cryovials. Each set of labels has the same 7-digit sample identification number. The first digit identifies the clinic:
The cryovial labels also have a 2-digit extension (01–67) that uniquely identifies each within a sample ID and helps in tracking. The blood collection area should have the following supplies on hand:
*provided by CBAL 4.5.1. Safety Issues and Precautions for Handling Blood SpecimensIn accordance with the OSHA regulations on bloodborne pathogens, the CBAL recommends the following laboratory safety protocol for the field center laboratories:
4.5.2. Participant ID LabelsThe Coordinating Center will supply each field center with sheets of sample ID barcode labels to use for labeling draw tubes, working tubes, cryovials, and freezer boxes. There will be a total of 61 labels: 7 labels for the draw tubes plus 3 extra labels, 2 labels for two pooling tubes, and 49 cryovial labels. Each participant set of barcode labels has the same 7-digit sample ID number (the first digit identifies the clinic–Columbia = 4 and UCLA = 8). The cryovial labels also have a 2-digit extension (01 to 67) that serves as a unique identifier for each cryovial within a sample ID–this helps in tracking the repository. See Appendix for proper orientation of the barcode label on the cryovial. The extra labels are used for the urine collection cups. There will also be special QC ID labels for the blind duplicate samples. See the section on blind duplicates for further information on the procedure. It is essential that blood and urine samples be precisely labeled throughout the collection and processing stages to ensure that participant samples are not miscoded. To facilitate accurate labeling, it is suggested that you pre-label sets of collection tubes and cryovials prior to the participant’s visit, with a crosscheck of the labels with each participant’s ID# prior to the phlebotomy. 4.5.3. Phlebotomy and Lab Processing Forms
4.5.4. Participant Refusal to Provide Urine Sample or Refusal of PhlebotomyRarely, a participant will refuse to provide a urine sample or will refuse phlebotomy. Please keep a list of MESA Air Enrollment ID #s of any of these participants and identify which test they refused. 4.5.5. Urine Collection and VenipunctureA. Preparation of Participants for Urine Collection
B. Urine Collection
C. Urine ProcessingFor urine storage, you will prepare one 4.0 mL Sarstedt clear-topped tube (#65) and two 10.0 mL white capped tube (#64 and #65). Process using the following instructions: Do not overfill the tubes. There must be room for the urine to expand when frozen.
D. Priority of tubes & Preparation of phlebotomy draw-tubes and aliquot racksA total of approximately 54.5 ml of blood will be drawn from each participant in 7 tubes. (20% will have 8 tubes collected for a total of 59.5 ml of blood) The order in which the tubes are collected is important. Blood collection must be drawn in the following order:
Please Note: The tube numbering is different from both MESA and MESA Family. Tubes #1 and #4 are 10ml EDTA tubes (Fisher Scientific # 22-311-743, Monoject # 8881311743). After centrifugation, plasma from these tubes are pooled and will be aliquoted into 17 purple-coded aliquots (#1–17). This plasma will be used for lipid levels and banked for future testing. Once the plasma is removed, the packed red cells from both tubes are transferred into two 10.0 ml white coded cryovials (#18–19). The packed red cells will be used for possible additional DNA extraction. For selected Blind Duplicate participants; an additional 5 ml EDTA tube (BD# 366452) will be used. Tubes #2 and #5 are 10ml red-topped Serum tubes (Fisher Scientific #22-301-710, Monoject # 8881301710). After filling, let these tubes stand at room temperature for a minimum of 40 minutes to allow the blood to clot. They are then centrifuged and the sera are pooled and aliquoted into 17 red-coded aliquots (#28–44). The serum will be tested for glucose and stored in repository for later analysis. For selected Blind Duplicate participants, an additional 5 ml Serum tube (BD# 366534) will be used. Tube #3 is a 4.5ml blue topped citrate tube, a silicon-coated glass tube containing 0.5ml of 3.2% sodium citrate (Fisher Scientific # 22-029-309, Monoject # 8881340486) After centrifugation, plasma is aliquoted into 4 blue-coded aliquots (#24–27). The plasma will be banked for future testing. Tube #6 is a 5ml red-topped “Special Coagulation” tube (SCAT-I) containing a white, powdered anticoagulant provided by CBAL. This tube contains a special combination of anticoagulants that ensure long-term stability of the plasma sample. Specifically, this tube, when filled, will contain 4.5 mm EDTA, 150 KIU/ml aprotinin and 20 uM D-Phe-Pro-Arg-chloroketone. The SCAT-1 tube must be stored refrigerated. It must be drawn after at least one other tube has been drawn. Important to note, this tube is ‘non-sterile’, therefore it must be drawn using a butterfly apparatus with 12 inches of tubing; alternatively, a syringe may be used for the venipuncture, and the blood expressed through the cap (with great care to limit turbulence) into the SCAT tube. It is critical that the SCAT-1 tube is mixed well (>30 sec of gentle inversion) before being placed on ice to await further processing/centrifugation. The four aliquots for this tube are yellow-coded, and the plasma will be stored in repository for future testing (#20–23). Tube #7 is a 5ml EDTA tube (Fisher Scientific 22-029-325, Monoject 8881311446). After centrifugation, plasma from this tube will be aliquoted into two purple-coded aliquots (#66–67). This plasma will be used for isoprostane levels. Summary of Blood Mixing During Venipuncture of MESA Air New Recruits Each tube should be treated as follows:
E. Collection of Blind Duplicate Tube20% of participants will have an additional tube of blood collected, for a total of eight tubes (approximately 59.5 mL) of blood. This sample is collected for quality control purposes. This sample is collected last into the Blind Duplicate Tube (#8). F. Preparation of Phlebotomy RoomPhlebotomy Room The blood drawing takes place in an isolated room or participants are separated by room dividers. The room is equipped with all of the necessary blood drawing supplies. A separate counter or work table is equipped with all of the materials and vials that are used in the blood handling and processing. The centrifuge, refrigerator, and freezer should be nearby. Setup of Draw Tube and Aliquot Racks To facilitate accurate tracking of collected specimens, we recommend that you set up a blood collection tube rack with the set of draw tubes, pre-labeled with the provided participant ID labels. The tubes should be in the rack according to the order in which they are to be drawn, as specified above. An aliquot rack, with pre-labeled cryovials, should be set up to correspond with each participant’s blood collection tube rack; and the cryovials should be in numerical order. It may be helpful to have the red cryovials per participant in a separate rack since the red serum collection tubes are generally centrifuged at a different time from the other tubes. G. Preparation for Specimen CollectionPreparation for specimen collection is done in the following manner. Early morning, prior to arrival of any participants:
H. Preparation of Participants for Phlebotomy
I. Venipuncture ProcedureALWAYS WEAR LATEX GLOVES AND LAB COAT
J. Guidelines for Difficulties (Same as in MESA)HANDLING PARTICIPANTS WHO ARE EXTREMELY APPREHENSIVE ABOUT HAVING BLOOD DRAWN. Do not under any circumstances force the participant to have blood drawn. It may help to explain to the participant that the blood drawing is designed to be as nearly painless as possible. It is sometimes best to let the participant go on with another part of the visit. It may also be helpful to have the participant relax in the blood drawing chair just so the phlebotomist can check the veins in the participant’s arms, without actually drawing blood. If the participant has “good veins” the phlebotomist can reassuringly say, “Oh, you have good veins; there should be no problem.”
K. Processing Specimens
L. Shipping Blood Samples
M. Quality Assurance
Alert Values The University of Minnesota will be analyzing these samples for Lipid Panel, Glucose, and Creatinine. The University of Vermont will run microalbumin on the urine samples. Alert values are as follows:
Blind Duplicates Blind duplicate samples will be collected on 5% of the participants on four different tube types. This results in 20% of all participants having a blind duplicate sample collected for QC. The criteria for collecting a blind duplicate sample will be based on a check digit in the participant’s ID number. The following tube types will be drawn (only one tube per participant depending on the check digit):
*provided by CBAL The blind duplicate tube is collected after the regular tubes are filled. It would be the seventh tube filled. The tubes are handled in the same way as the regular collection tubes. EDTA, Citrate, SCAT-I are placed on the mixer for approximately 30 seconds, then placed in ice, and centrifuged within 15 to 30 minutes. Serum remains at room temperature for a minimum of 40 minutes to clot before centrifuging. Aliquoting Scheme:
Cryovials must be labeled with a QC ID#. This ID# is matched to the Participant ID#. Blind Duplicates cryovials should have barcode labels with 2-digit cryovial numbers to facilitate tracking of the samples. After aliquoting, cryovials are frozen immediately at −70°C in an upright position. Blind Duplicate cryovials are placed in their own freezer box with a 9 × 9 grid. More than one participant’s samples are included in one box. These samples are shipped a week or so after the original samples are sent out to the CBAL, so that the laboratory cannot match them with the original participant. Include the completed Blind Duplicate Shipping Log when these frozen samples are shipped. Urine Blind Duplicates Blind duplicates will also be processed for urine. Whenever an EDTA blind duplicate is being collected on a participant, a urine blind duplicate should also be processed. On each participant selected for EDTA QC, the QC ID# will be the same for both the EDTA and the urine blind duplicate cryovials. After aliquoting the participant’s urine into tubes #63–65, aliquot 3 ml of the remaining urine into a 4 ml tube. Carefully label this tube with the QC ID# and freeze immediately. Urine blind duplicates should be stored separately from the participant’s original sample set, in a freezer box with a 7 × 7 grid. It is important to complete the Blind Duplicate Shipping Log and include a copy in the shipping box with the frozen samples. Ship frozen urine blind duplicates at least one week after the original participant’s samples are shipped to CBAL.
FIELD CENTER FORMS MESA Air Phlebotomy/Processing Form MESA Air Shipping Log MESA Air Blind Duplicate Shipping Log MESA Air Field Center Supervisor Checklist MESA Field Center Technician Certification Examinations MESA Air Equipment Temperature Logs (Same as MESA Exam 4) DIAGRAMS/INSTRUCTIONALS: Aliquoting Scheme Flow Chart Freezer Box Diagram IATA Packing Instructions 650 and 904 MESA Air Pollution New Recruits Freezer Box Diagram Freezer Box design for shipping FROZEN samples to CBAL Each box holds blood, packed cells and urine samples from one participant 49 total: 44 cryovials (1.5mL and 2.0mL) and 5 tubes- (4.0mL and 10mL packed cells and urine tubes) Samples are shipped frozen on Dry Ice to Vermont once a week. MESA Air New Recruit Processing Guide Which of the following instructions should a phlebotomist provide a patient who is collecting a urine specimen for culture?Phlebotomy 1. What procedures do phlebotomist use to collect a blood sample?Take blood
Ask the patient to form a fist so the veins are more prominent. Enter the vein swiftly at a 30 degree angle or less, and continue to introduce the needle along the vein at the easiest angle of entry. Once sufficient blood has been collected, release the tourniquet BEFORE withdrawing the needle.
Which of the following pieces of information is a phlebotomist required to include on the label of a blood specimen tube?Which of the following is the phlebotomist required to document on a CBC specimen label? Patient's identification number.
When collecting a capillary specimen a phlebotomist should collect which of the following first?Order of draw. With skin punctures, the haematology specimen is collected first, followed by the chemistry and blood bank specimens. This order of drawing is essential to minimize the effects of platelet clumping.
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